Installation

Prerequisites

• numpy (https://numpy.org/)
• scikit-learn (https://scikit-learn.org/stable/)
• scipy (https://www.scipy.org/)
• statsmodels (https://www.statsmodels.org/stable/index.html)
• scanpy (https://scanpy.readthedocs.io/en/stable/)

Scanpy is needed to be installed from https://scanpy.readthedocs.io/en/stable/installation.html.

Install GiniClust3 from PyPI (consider using pip3 for python 3):

pip install giniclust3

OR download from Github and install

git clone https://github.com/rdong08/GiniClust3.git
cd GiniClust3
python setup.py install

OR install by using anaconda

conda install -c rdong giniclust3