gc.plot.plotGini

Umap or TSNE visualization based on Gini genes.

gc.plot.plotGini(adataGini)

Parameters

adata: Anndata
    Anndata with Gini gene information.
method: string, optional (Default: 'umap')
    Choose a method to do the visualization. 'method' should be 'umap' or 'tsne'.

Returns

UMAP or TSNE plot in "figure/finalCluster_gini.pdf".

Example

gc.plot.plotGini(adataGini,method='umap')