gc.plot.plotFano
Umap or TSNE visualization based on highly variable genes.
gc.plot.plotFano(adataFano)
Parameters
adata: Anndata
Anndata with highly variable gene information.
method: string, optional (Default: 'umap')
Choose a method to do the visualization. 'method' should be 'umap' or 'tsne'.
Returns
UMAP or TSNE plot in "figure/finalCluster_fano.pdf".
Example
gc.plot.plotFano(adataFano,method='umap')