gc.plot.plotFano

Umap or TSNE visualization based on highly variable genes.

gc.plot.plotFano(adataFano)

Parameters

adata: Anndata
    Anndata with highly variable gene information.
method: string, optional (Default: 'umap')
    Choose a method to do the visualization. 'method' should be 'umap' or 'tsne'.

Returns

UMAP or TSNE plot in "figure/finalCluster_fano.pdf".

Example

gc.plot.plotFano(adataFano,method='umap')